species:   Clros
pid:       PID2267
parent:    cro-mir-59
paralog:   
locus:     CADEHS020000521.2:317998-318082
matures:   ['UCUGAACAGCGCCUGAGAGC', 'GAAUCUCUGGGGCAGCGUCAGAA']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000521.2:317998-318082

8 out of bounds
1 alignments
0 proper strand
0 stranded perfect matches

********************                                       ************************* 
UCUGAACAGCGCCUGAGAGCGAGCAAGCAAGCGAGCGAACGAGCGUGAGGGCUGGCAGCGAGAAUCUCUGGGGCAGCGUCAGAAG
(((((.(.((((((.((((((.((.(((...((.((......)).))...))).))..)).....)))).)))).))))))))..
UCUGAACAGCGCCUGAGAGC----------------------------------------------------------------- l=20 a=0 c
-------------------------------------------------------------GAAUCUCUGGGGCAGCGUCAGAA- l=23 a=0 c*
UCUGAACAGCGCCUGAGAGC----------------------------------------------------------------- l=20 a=0 ma
-------------------------------------------------------------GAAUCUCUGGGGCAGCGUCAGAA- l=23 a=0 ma*


No alignments to locus

mb-00011
ax-1011011
ku-01
ss-100111001000
fn-001
